HL_5NJT_098

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5NJT|1|U|G|2780, 5NJT|1|U|C|2784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_098 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.158

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5NJT|1|U|C|2774
5NJT|1|U|U|2775
5NJT|1|U|G|2776
5NJT|1|U|A|2777
5NJT|1|U|A|2778
5NJT|1|U|A|2779
5NJT|1|U|G|2780
5NJT|1|U|C|2781
5NJT|1|U|A|2782
5NJT|1|U|U|2783
5NJT|1|U|C|2784
5NJT|1|U|U|2785
5NJT|1|U|A|2786
5NJT|1|U|A|2787
5NJT|1|U|G|2788

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L6

Chain c

50S ribosomal protein L13

Chain t

50S ribosomal protein L36