HL_5NJT_105

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

5NJT|1|U|U|2334, 5NJT|1|U|A|2340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_105 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.5762

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5NJT|1|U|G|2333
5NJT|1|U|U|2334
5NJT|1|U|U|2335
5NJT|1|U|G|2336
5NJT|1|U|G|2337
5NJT|1|U|A|2338
5NJT|1|U|A|2339
5NJT|1|U|A|2340
5NJT|1|U|U|2341

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L5