HL_5NO2_017

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NO2_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1998

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5NO2|1|A|G|786
5NO2|1|A|A|787
5NO2|1|A|U|788
5NO2|1|A|U|789
5NO2|1|A|A|790
5NO2|1|A|G|791
5NO2|1|A|A|792
5NO2|1|A|U|793
5NO2|1|A|A|794
5NO2|1|A|C|795
5NO2|1|A|C|796

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain Z

Small ribosomal subunit biogenesis GTPase RsgA