HL_5NO2_024

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5NO2|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NO2_024 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1288

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5NO2|1|A|G|1089
5NO2|1|A|U|1090
5NO2|1|A|U|1091
5NO2|1|A|A|1092
5NO2|1|A|A|1093
5NO2|1|A|G|1094
5NO2|1|A|U|1095
5NO2|1|A|C|1096

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S7