HL_5NO3_013

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NO3_013 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1872

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5NO3|1|A|G|521
5NO3|1|A|C|522
5NO3|1|A|A|523
5NO3|1|A|G|524
5NO3|1|A|C|525
5NO3|1|A|C|526
5NO3|1|A|G7M|527
5NO3|1|A|C|528

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Z

Small ribosomal subunit biogenesis GTPase RsgA