HL_5NO3_026

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

5NO3|1|A|C|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NO3_026 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3861

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5NO3|1|A|G|1133
5NO3|1|A|G|1134
5NO3|1|A|U|1135
5NO3|1|A|C|1136
5NO3|1|A|C|1137
5NO3|1|A|G|1138
5NO3|1|A|G|1139
5NO3|1|A|C|1140
5NO3|1|A|C|1141

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9