HL_5NO4_008

3D structure

PDB id

5NO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases (A, C, G, U)

328C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NO4_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1552

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5NO4|1|A|A|320
5NO4|1|A|A|321
5NO4|1|A|C|322
5NO4|1|A|U|323
5NO4|1|A|G|324
5NO4|1|A|A|325
5NO4|1|A|G|326
5NO4|1|A|A|327
5NO4|1|A|C|328
5NO4|1|A|A|329
5NO4|1|A|C|330
5NO4|1|A|G|331
5NO4|1|A|G|332
5NO4|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20