HL_5NP6_033

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_033 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.1115

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NP6|1|D|C|1314
5NP6|1|D|U|1315
5NP6|1|D|G|1316
5NP6|1|D|C|1317
5NP6|1|D|A|1318
5NP6|1|D|A|1319
5NP6|1|D|C|1320
5NP6|1|D|U|1321
5NP6|1|D|C|1322
5NP6|1|D|G|1323

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S13

Chain Q

30S ribosomal protein S14

Chain V

30S ribosomal protein S19