HL_5NP6_039

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

5NP6|1|Y|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_039 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1468

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5NP6|1|Y|G|123
5NP6|1|Y|G|124
5NP6|1|Y|A|125
5NP6|1|Y|A|126
5NP6|1|Y|A|127
5NP6|1|Y|C|128

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain r

50S ribosomal protein L23