HL_5NP6_042

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5NP6|1|Y|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_042 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.184

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5NP6|1|Y|G|194
5NP6|1|Y|A|195
5NP6|1|Y|A|196
5NP6|1|Y|A|197
5NP6|1|Y|C|198
5NP6|1|Y|A|199
5NP6|1|Y|U|200
5NP6|1|Y|C|201

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L15

Chain v

50S ribosomal protein L28