HL_5NP6_048

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5NP6|1|Y|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_048 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.151

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5NP6|1|Y|G|410
5NP6|1|Y|G|411
5NP6|1|Y|A|412
5NP6|1|Y|C|413
5NP6|1|Y|C|414
5NP6|1|Y|A|415
5NP6|1|Y|U|416
5NP6|1|Y|C|417

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L15