HL_5NP6_058

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5NP6|1|Y|A|781, 5NP6|1|Y|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_058 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1873

The information below is about HL_7A0S_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5NP6|1|Y|U|779
5NP6|1|Y|G|780
5NP6|1|Y|A|781
5NP6|1|Y|A|782
5NP6|1|Y|A|783
5NP6|1|Y|G|784
5NP6|1|Y|G|785

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2