HL_5NP6_074

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

5NP6|1|Y|A|1614, 5NP6|1|Y|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_074 not in the Motif Atlas

Homologous match to HL_9DFE_038

Geometric discrepancy: 0.1668

The information below is about HL_9DFE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5NP6|1|Y|C|1612
5NP6|1|Y|G|1613
5NP6|1|Y|A|1614
5NP6|1|Y|C|1615
5NP6|1|Y|A|1616
5NP6|1|Y|C|1617
5NP6|1|Y|6MZ|1618
5NP6|1|Y|G|1619

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain C

DNA topoisomerase small subunit

Chain q

50S ribosomal protein L22