HL_5NP6_075

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

5NP6|1|Y|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_075 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.4499

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5NP6|1|Y|U|1629
5NP6|1|Y|A|1630
5NP6|1|Y|G|1631
5NP6|1|Y|A|1632
5NP6|1|Y|G|1633
5NP6|1|Y|A|1634
5NP6|1|Y|A|1635
5NP6|1|Y|U|1636
5NP6|1|Y|A|1637

Current chains

Chain Y

23S ribosomal RNA

Nearby chains