HL_5NP6_094

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

5NP6|1|Y|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_094 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.261

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5NP6|1|Y|A|2471
5NP6|1|Y|G|2472
5NP6|1|Y|U|2473
5NP6|1|Y|U|2474
5NP6|1|Y|C|2475
5NP6|1|Y|A|2476
5NP6|1|Y|U|2477
5NP6|1|Y|A|2478
5NP6|1|Y|U|2479

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6