HL_5NP6_100

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5NP6|1|Y|G|2751, 5NP6|1|Y|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_100 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1285

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5NP6|1|Y|C|2745
5NP6|1|Y|U|2746
5NP6|1|Y|G|2747
5NP6|1|Y|A|2748
5NP6|1|Y|A|2749
5NP6|1|Y|A|2750
5NP6|1|Y|G|2751
5NP6|1|Y|C|2752
5NP6|1|Y|A|2753
5NP6|1|Y|U|2754
5NP6|1|Y|C|2755
5NP6|1|Y|U|2756
5NP6|1|Y|A|2757
5NP6|1|Y|A|2758
5NP6|1|Y|G|2759

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain h

50S ribosomal protein L13