HL_5NP6_110

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

5NP6|1|Y|U|958, 5NP6|1|Y|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_110 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.252

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5NP6|1|Y|PSU|955
5NP6|1|Y|G|956
5NP6|1|Y|C|957
5NP6|1|Y|U|958
5NP6|1|Y|A|959
5NP6|1|Y|A|960
5NP6|1|Y|C|961
5NP6|1|Y|G|962

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain Z

5S ribosomal RNA; 5S rRNA

Chain k

50S ribosomal protein L16