HL_5NRG_002
3D structure
- PDB id
- 5NRG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- UGUAAGUAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NRG_002 not in the Motif Atlas
- Homologous match to HL_4WF9_002
- Geometric discrepancy: 0.1257
- The information below is about HL_4WF9_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_77600.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5NRG|1|X|U|87
5NRG|1|X|G|88
5NRG|1|X|U|89
5NRG|1|X|A|90
5NRG|1|X|A|91
5NRG|1|X|G|92
5NRG|1|X|U|93
5NRG|1|X|A|94
5NRG|1|X|A|95
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L23
- Chain R
- 50S ribosomal protein L24
- Chain V
- 50S ribosomal protein L29
Coloring options: