HL_5NRG_013

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

AGCACGUGAAAUU

Length

13 nucleotides

Bulged bases

5NRG|1|X|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.0982

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NRG|1|X|A|427
5NRG|1|X|G|428
5NRG|1|X|C|429
5NRG|1|X|A|430
5NRG|1|X|C|431
5NRG|1|X|G|432
5NRG|1|X|U|433
5NRG|1|X|G|434
5NRG|1|X|A|435
5NRG|1|X|A|436
5NRG|1|X|A|437
5NRG|1|X|U|438
5NRG|1|X|U|439

Current chains

Chain X

23S ribosomal RNA

Nearby chains