HL_5NRG_014

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5NRG|1|X|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_014 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.1222

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5NRG|1|X|G|456
5NRG|1|X|G|457
5NRG|1|X|A|458
5NRG|1|X|C|459
5NRG|1|X|C|460
5NRG|1|X|A|461
5NRG|1|X|U|462
5NRG|1|X|C|463

Current chains

Chain X

23S ribosomal RNA

Nearby chains