HL_5NRG_018

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UUUUGUAGAA

Length

10 nucleotides

Bulged bases

5NRG|1|X|A|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_018 not in the Motif Atlas

Geometric match to HL_4WF9_018

Geometric discrepancy: 0.0756

The information below is about HL_4WF9_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

5NRG|1|X|U|609
5NRG|1|X|U|610
5NRG|1|X|U|611
5NRG|1|X|U|612
5NRG|1|X|G|613
5NRG|1|X|U|614
5NRG|1|X|A|615
5NRG|1|X|G|616
5NRG|1|X|A|617
5NRG|1|X|A|618

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32