HL_5NRG_022

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAGGCUG

Length

7 nucleotides

Bulged bases

5NRG|1|X|C|764

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_022 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2972

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5NRG|1|X|C|755
5NRG|1|X|A|756
5NRG|1|X|G|757
5NRG|1|X|G|758
5NRG|1|X|C|764
5NRG|1|X|U|765
5NRG|1|X|G|766

Current chains

Chain X

23S ribosomal RNA

Nearby chains