HL_5NRG_024

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAGAAAUUC

Length

9 nucleotides

Bulged bases

5NRG|1|X|A|826

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_024 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2388

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|G|823
5NRG|1|X|A|824
5NRG|1|X|G|825
5NRG|1|X|A|826
5NRG|1|X|A|827
5NRG|1|X|A|828
5NRG|1|X|U|829
5NRG|1|X|U|830
5NRG|1|X|C|831

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2