HL_5NRG_039

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

5NRG|1|X|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.0852

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5NRG|1|X|A|1673
5NRG|1|X|U|1674
5NRG|1|X|G|1675
5NRG|1|X|A|1676
5NRG|1|X|G|1677
5NRG|1|X|A|1678
5NRG|1|X|A|1679
5NRG|1|X|U|1680
5NRG|1|X|U|1681

Current chains

Chain X

23S ribosomal RNA

Nearby chains