HL_5NRG_043

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UUUAUCAAAAA

Length

11 nucleotides

Bulged bases

5NRG|1|X|A|1807, 5NRG|1|X|U|1808, 5NRG|1|X|C|1809, 5NRG|1|X|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_043 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1119

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5NRG|1|X|U|1804
5NRG|1|X|U|1805
5NRG|1|X|U|1806
5NRG|1|X|A|1807
5NRG|1|X|U|1808
5NRG|1|X|C|1809
5NRG|1|X|A|1810
5NRG|1|X|A|1811
5NRG|1|X|A|1812
5NRG|1|X|A|1813
5NRG|1|X|A|1814

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2