HL_5NRG_046

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5NRG|1|X|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_046 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1259

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5NRG|1|X|G|1976
5NRG|1|X|G|1977
5NRG|1|X|U|1978
5NRG|1|X|A|1979
5NRG|1|X|A|1980
5NRG|1|X|G|1981
5NRG|1|X|U|1982
5NRG|1|X|U|1983
5NRG|1|X|C|1984

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L14