HL_5NRG_052

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_052 not in the Motif Atlas

Homologous match to HL_7A0S_054

Geometric discrepancy: 0.5978

The information below is about HL_7A0S_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5NRG|1|X|G|2330
5NRG|1|X|G|2331
5NRG|1|X|U|2332
5NRG|1|X|U|2333
5NRG|1|X|G|2334
5NRG|1|X|G|2335
5NRG|1|X|A|2336
5NRG|1|X|A|2337
5NRG|1|X|A|2338
5NRG|1|X|U|2339
5NRG|1|X|C|2340

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain Y

5S ribosomal RNA; 5S rRNA