HL_5NRG_067
3D structure
- PDB id
- 5NRG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- UUCCCAUGCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 5NRG|1|Y|G|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NRG_067 not in the Motif Atlas
- Homologous match to HL_4WF9_070
- Geometric discrepancy: 0.1277
- The information below is about HL_4WF9_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5NRG|1|Y|U|32
5NRG|1|Y|U|33
5NRG|1|Y|C|34
5NRG|1|Y|C|35
5NRG|1|Y|C|36
5NRG|1|Y|A|37
5NRG|1|Y|U|38
5NRG|1|Y|G|39
5NRG|1|Y|C|40
5NRG|1|Y|C|41
5NRG|1|Y|G|42
5NRG|1|Y|A|43
5NRG|1|Y|A|44
5NRG|1|Y|C|45
5NRG|1|Y|A|46
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: