HL_5NRG_069

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAAGCUUGCUUG

Length

12 nucleotides

Bulged bases

5NRG|1|X|C|284, 5NRG|1|X|U|285, 5NRG|1|X|U|286, 5NRG|1|X|U|290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_069 not in the Motif Atlas

Homologous match to HL_4WF9_068

Geometric discrepancy: 0.4274

The information below is about HL_4WF9_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76195.1

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5NRG|1|X|C|280
5NRG|1|X|A|281
5NRG|1|X|A|282
5NRG|1|X|G|283
5NRG|1|X|C|284
5NRG|1|X|U|285
5NRG|1|X|U|286
5NRG|1|X|G|287
5NRG|1|X|C|288
5NRG|1|X|U|289
5NRG|1|X|U|290
5NRG|1|X|G|291

Current chains

Chain X

23S ribosomal RNA

Nearby chains