HL_5NWY_026

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_026 not in the Motif Atlas

Geometric match to HL_8C3A_021

Geometric discrepancy: 0.3452

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5NWY|1|0|G|1133
5NWY|1|0|G|1134
5NWY|1|0|U|1135
5NWY|1|0|C|1136
5NWY|1|0|C|1137
5NWY|1|0|G|1138
5NWY|1|0|G|1139
5NWY|1|0|C|1140
5NWY|1|0|C|1141

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 8

30S ribosomal protein S9