HL_5NWY_047

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5NWY|1|N|G|386, 5NWY|1|N|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_047 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5NWY|1|N|A|382
5NWY|1|N|C|383
5NWY|1|N|A|384
5NWY|1|N|C|385
5NWY|1|N|G|386
5NWY|1|N|U|387
5NWY|1|N|G|388
5NWY|1|N|G|389
5NWY|1|N|U|390
5NWY|1|N|A|391
5NWY|1|N|U|392

Current chains

Chain N

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L28