HL_5NWY_069

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_069 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.0727

The information below is about HL_5J7L_167

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_87030.3

Basepair signature

cWW-F-F

Number of instances in this motif group

30

Unit IDs

5NWY|1|N|C|1363
5NWY|1|N|G|1364
5NWY|1|N|A|1365
5NWY|1|N|A|1366
5NWY|1|N|A|1367
5NWY|1|N|G|1368

Current chains

Chain N

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L28

Chain p

50S ribosomal protein L34