HL_5O5J_017
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5O5J|1|A|U|773
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5O5J_017 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.1307
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5O5J|1|A|G|766
5O5J|1|A|A|767
5O5J|1|A|U|768
5O5J|1|A|U|769
5O5J|1|A|A|770
5O5J|1|A|G|771
5O5J|1|A|A|772
5O5J|1|A|U|773
5O5J|1|A|A|774
5O5J|1|A|C|775
5O5J|1|A|C|776
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S11
- Chain W
- tRNA-Phe anticodon stem
- Chain X
- mRNA fragment
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