HL_5O60_011

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

5O60|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_011 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1381

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

5O60|1|A|U|387
5O60|1|A|U|388
5O60|1|A|G|389
5O60|1|A|G|390
5O60|1|A|G|391
5O60|1|A|A|392
5O60|1|A|U|393
5O60|1|A|G|394

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L24