HL_5O60_058

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

5O60|1|A|A|2492, 5O60|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_058 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0884

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5O60|1|A|C|2488
5O60|1|A|U|2489
5O60|1|A|A|2490
5O60|1|A|A|2491
5O60|1|A|A|2492
5O60|1|A|A|2493
5O60|1|A|U|2494
5O60|1|A|G|2495
5O60|1|A|U|2496
5O60|1|A|A|2497
5O60|1|A|A|2498
5O60|1|A|C|2499
5O60|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27