HL_5O60_059

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GGACGGCAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_059 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1247

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5O60|1|A|G|2527
5O60|1|A|G|2528
5O60|1|A|A|2529
5O60|1|A|C|2530
5O60|1|A|G|2531
5O60|1|A|G|2532
5O60|1|A|C|2533
5O60|1|A|A|2534
5O60|1|A|A|2535
5O60|1|A|U|2536
5O60|1|A|C|2537

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5