HL_5O60_063

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UGAGUGGAAG

Length

10 nucleotides

Bulged bases

5O60|1|A|A|2630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_063 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0848

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5O60|1|A|U|2628
5O60|1|A|G|2629
5O60|1|A|A|2630
5O60|1|A|G|2631
5O60|1|A|U|2632
5O60|1|A|G|2633
5O60|1|A|G|2634
5O60|1|A|A|2635
5O60|1|A|A|2636
5O60|1|A|G|2637

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15