HL_5O60_079
3D structure
- PDB id
- 5O60 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- GUCCCAUCCCGAACC
- Length
- 15 nucleotides
- Bulged bases
- 5O60|1|B|C|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5O60_079 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.1612
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5O60|1|B|G|35
5O60|1|B|U|36
5O60|1|B|C|37
5O60|1|B|C|38
5O60|1|B|C|39
5O60|1|B|A|40
5O60|1|B|U|41
5O60|1|B|C|42
5O60|1|B|C|43
5O60|1|B|C|44
5O60|1|B|G|45
5O60|1|B|A|46
5O60|1|B|A|47
5O60|1|B|C|48
5O60|1|B|C|49
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain P
- 50S ribosomal protein L18
- Chain g
- 50S ribosomal protein L31
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