HL_5O61_006

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5O61|1|A|A|195, 5O61|1|A|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0835

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5O61|1|A|G|193
5O61|1|A|A|194
5O61|1|A|A|195
5O61|1|A|A|196
5O61|1|A|C|197
5O61|1|A|A|198
5O61|1|A|U|199
5O61|1|A|C|200

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

LSU ribosomal protein L28P