HL_5O61_013

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

5O61|1|A|G|411, 5O61|1|A|A|412, 5O61|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2156

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5O61|1|A|G|409
5O61|1|A|U|410
5O61|1|A|G|411
5O61|1|A|A|412
5O61|1|A|G|413
5O61|1|A|A|414
5O61|1|A|G|415
5O61|1|A|C|416
5O61|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24