HL_5O61_022

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

5O61|1|A|U|739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_022 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.3252

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5O61|1|A|U|735
5O61|1|A|G|736
5O61|1|A|A|737
5O61|1|A|A|738
5O61|1|A|U|739
5O61|1|A|A|740
5O61|1|A|G|741

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain c

50S ribosomal protein L33 1

Chain e

50S ribosomal protein L35