HL_5O61_023

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

AAGAGU

Length

6 nucleotides

Bulged bases

5O61|1|A|A|758, 5O61|1|A|G|759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_023 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.2016

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5O61|1|A|A|755
5O61|1|A|A|756
5O61|1|A|G|757
5O61|1|A|A|758
5O61|1|A|G|759
5O61|1|A|U|760

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L27