HL_5O61_052

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5O61|1|A|A|2137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_052 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.1629

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

5O61|1|A|G|2134
5O61|1|A|U|2135
5O61|1|A|A|2136
5O61|1|A|A|2137
5O61|1|A|C|2138
5O61|1|A|U|2139
5O61|1|A|A|2140
5O61|1|A|U|2141
5O61|1|A|A|2142
5O61|1|A|A|2143
5O61|1|A|C|2144

Current chains

Chain A

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BW

Transfer RNA; tRNA