HL_5O61_067

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_067 not in the Motif Atlas

Homologous match to HL_5J7L_196

Geometric discrepancy: 0.0947

The information below is about HL_5J7L_196

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5O61|1|A|C|2818
5O61|1|A|G|2819
5O61|1|A|U|2820
5O61|1|A|G|2821
5O61|1|A|A|2822
5O61|1|A|G|2823

Current chains

Chain A

23S rRNA

Nearby chains

Chain BW

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2