HL_5O61_070

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5O61|1|A|G|2975, 5O61|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_070 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1042

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5O61|1|A|C|2969
5O61|1|A|U|2970
5O61|1|A|G|2971
5O61|1|A|A|2972
5O61|1|A|A|2973
5O61|1|A|A|2974
5O61|1|A|G|2975
5O61|1|A|C|2976
5O61|1|A|A|2977
5O61|1|A|U|2978
5O61|1|A|C|2979
5O61|1|A|U|2980
5O61|1|A|A|2981
5O61|1|A|A|2982
5O61|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36