HL_5O61_092

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_092 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.0918

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5O61|1|BA|C|706
5O61|1|BA|G|707
5O61|1|BA|A|708
5O61|1|BA|A|709
5O61|1|BA|G|710
5O61|1|BA|G|711

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BO

30S ribosomal protein S15