HL_5O61_101

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5O61|1|BA|G|1074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O61_101 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1293

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5O61|1|BA|G|1069
5O61|1|BA|U|1070
5O61|1|BA|U|1071
5O61|1|BA|A|1072
5O61|1|BA|A|1073
5O61|1|BA|G|1074
5O61|1|BA|U|1075
5O61|1|BA|C|1076

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BV

30S ribosomal protein S2