HL_5OBM_174
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- 5OBM|1|5|U|2842
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OBM_174 not in the Motif Atlas
- Homologous match to HL_8C3A_062
- Geometric discrepancy: 0.2009
- The information below is about HL_8C3A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5OBM|1|5|C|2840
5OBM|1|5|G|2841
5OBM|1|5|U|2842
5OBM|1|5|U|2843
5OBM|1|5|C|2844
5OBM|1|5|A|2845
5OBM|1|5|U|2846
5OBM|1|5|A|2847
5OBM|1|5|G|2848
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m0
- 60S ribosomal protein L10
- Chain q0
- Ubiquitin-60S ribosomal protein L40
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