HL_5ON6_121

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5ON6|1|A|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_121 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.082

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5ON6|1|A|G|330
5ON6|1|A|A|331
5ON6|1|A|U|332
5ON6|1|A|A|333
5ON6|1|A|G|334
5ON6|1|A|U|335
5ON6|1|A|G|336
5ON6|1|A|G|337
5ON6|1|A|C|338

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8-A

Chain M

40S ribosomal protein S11-A