HL_5ON6_157

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

5ON6|1|AR|G|283, 5ON6|1|AR|A|284, 5ON6|1|AR|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_157 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.0465

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5ON6|1|AR|U|278
5ON6|1|AR|U|279
5ON6|1|AR|U|280
5ON6|1|AR|G|281
5ON6|1|AR|G|282
5ON6|1|AR|G|283
5ON6|1|AR|A|284
5ON6|1|AR|A|285
5ON6|1|AR|U|286
5ON6|1|AR|G|287

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CN

60S ribosomal protein L13-A

Chain CP

60S ribosomal protein L15-A

Chain DC

60S ribosomal protein L28

Chain DQ

60S ribosomal protein L42-A